NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179587_10017493

Scaffold Ga0179587_10017493


Overview

Basic Information
Taxon OID3300026557 Open in IMG/M
Scaffold IDGa0179587_10017493 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3819
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F004921Metagenome418Y

Sequences

Protein IDFamilyRBSSequence
Ga0179587_100174935F004921GGAGMPKKKKRKAVMVDGIPIKPISPAEHRRLDRRIKKNYEKLRRRYPEVHGKKVDWISHWHEEGYLSFNVRFTDGKNFSILCSPTIVTNVVDFSDVKTGDSVIIREYYRRRDD
Ga0179587_100174936F002013N/ALKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRKLEEDDESRFEEEFNVWLSDEPLTNDEICQLMRVVERERKLEGKPPLVQFLPRSKRQKKTPKKTEGVHSNRKLNGPPPPASGVESTVRGDAHA
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