NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179587_10185254

Scaffold Ga0179587_10185254


Overview

Basic Information
Taxon OID3300026557 Open in IMG/M
Scaffold IDGa0179587_10185254 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1313
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007488Metagenome / Metatranscriptome350Y
F015771Metagenome / Metatranscriptome252Y
F018787Metagenome / Metatranscriptome233Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0179587_101852541F018787GGAGGMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSAADKAAI
Ga0179587_101852542F007488N/AMHIRTYEESDLGALRAIHARQGFGYAFPDLSDPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPESGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPRIAQKFGKRLARLGWIRDDEWTPYCKRLS
Ga0179587_101852543F106044AGGAGMPNLTYNATWDFNPGDTVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0179587_101852544F015771N/AATNGWFDLAITDPAVTRPGLSYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVVGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
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