NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179587_10702170

Scaffold Ga0179587_10702170


Overview

Basic Information
Taxon OID3300026557 Open in IMG/M
Scaffold IDGa0179587_10702170 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Candidatus Methanoperedenaceae → Candidatus Methanoperedens → Candidatus Methanoperedens nitroreducens(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039798Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0179587_107021701F039798N/AVESGKMQRLNHLGTALLLTFAVTATARSQAKPLPGPDVQEIYDRLVKQIEQIPIYDNHSHATFPDDSDMDAMASPPGESTVLRLRDTNPEFVAAAKALFGYPYDDFKPEHAKWLIDKKKAAEAAGGTAYWDSILDKMNIETCLANRVALAPYLDPKRFHWVFFVDSFLFPFDNHNLIAKNGDMGVYIPLQEKVLRRYMKQENVSGLPADLASYESFV
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