NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_110925

Scaffold Ga0208661_110925


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_110925 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065947Metagenome127Y
F099550Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1109251F065947AGGMKMLPSNHTFSLAKIRGVFKRKRGSELSCVAYGTGNLSRKIGRGYFFYDFDTSDEKEVERFRKYVQHTFYVAYVLFRTKHGVMVMSTLTFSFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWQTGRVVSA
Ga0208661_1109252F099550AGGMYQLTDEIKKLLATKHKSMQIVWVPLPVLDEIAQIAEKLHLALNQTIIVLVIHALRGAQPQPPDGTAHFLCPICLQSFTSPEDFLTHLKGDENVAIKPHI
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Institute for Fundamental Biomedical Research
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