Scaffold Ga0208579_100625

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208579_100625

Scaffold Ga0208579_100625

Overview

Basic Information
Taxon OID	3300026689 Open in IMG/M
Scaffold ID	Ga0208579_100625 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN581 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1174
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.070856	Long. (^o)	-96.582821	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067224	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208579_1006251	F067224	GGAGG	VAKSARTVWLLDDDPSVLKATGRLLAGWIKTVGKWIGKRPADVPTAAAQKEKFEAKEVLREAERKDAIKVLKTELQRLTQENQELRTIVERLTWENKQAEVSISLLEQELHVSGGS

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