Basic Information | |
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Taxon OID | 3300026695 Open in IMG/M |
Scaffold ID | Ga0208840_100511 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN391 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 765 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_54_36 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
Source Dataset Sampling Location | ||||||||
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Location Name | Willamette National Forest, Oregon, USA | |||||||
Coordinates | Lat. (o) | 44.20517707 | Long. (o) | -122.1284473 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F032614 | Metagenome / Metatranscriptome | 179 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208840_1005112 | F032614 | N/A | SATRPIIVAWRVLSGAASEKGKEAQVTRELLEQVLAGAGPNAISLLLADALYADGPLLAWLKYEKGIDALVRLPEDRLLYQDVQGLADAHLIEWTHHRYVRTVQGHKHMREVEVTAAAELTSWDSFLEAAASYGVTDATLWACLIHDVTTQETAQEPPMGLVSTRRWRDGFTARPRLPPPLAH |
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