Scaffold Ga0208342_104220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208342_104220

Scaffold Ga0208342_104220

Overview

Basic Information
Taxon OID	3300026723 Open in IMG/M
Scaffold ID	Ga0208342_104220 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Chapel Hill, North Carolina, USA
Coordinates	Lat. (^o)	35.913	Long. (^o)	-79.056	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004492	Metagenome	436	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208342_1042201	F004492	N/A	GGTEEDARETKSGVENPAYAHGIVVKMGAQQEFSFFDHFEELLFDRIGTPPRNSAANVEQIRQTTNDRIDNTVFEMNKFVVDKNPMVGLAWRNIHDAVQAKFKDVPEPARQKQIEDLTKQTYYVYVFLDLYARMDDLRSRGSMSPNDDMIVQWKRSWLPNLMRSELGRWML

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