NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_101161

Scaffold Ga0208559_101161


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_101161 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4148
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F076264Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1011612F085905N/AMEEQLSFPSSRLSQFDYVGMNAYWLNTRLRYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARYLLPYSVLEVIRRHLKK
Ga0208559_1011613F063848N/AVTKKRRSVHDPTLSVIHYQEQLEKMAKAFEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIVHATTLTCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK
Ga0208559_1011616F087445AGGMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVVENARRNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLKEVMESEE
Ga0208559_1011618F076264GAGMSAISSAIQSMVNGLQSLFVALIDVFSNAVNAIGNTLASLANPIGYLVGVLAVFGSLISIIYYVFRGKGGVGGLVSGIRSVFTSFF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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