NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_101794

Scaffold Ga0208559_101794


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_101794 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F080247Metagenome / Metatranscriptome115Y
F085905Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1017942F085905GGAGGLSFPSSRLSQFDYVAMNAYWLNTRLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYHSIPMDALQNIMKSLIDFMNDKLKILDKLKEKLDERVILMMWNQLYIFVMGFLYGLYGRDAESVFQGIVARHLLPFGMLETIRRYTKK
Ga0208559_1017944F061983AGGAGGLKKEEIKVTVIPIKLFDEEYVLSEKEFEEVKKTMIYKGMKVLEIKDLGTDPVRNWMHFYIITAVSEGGGLFDCYYGDTIIVEKLKDVGAIIIKDKDTQPVKTMKTLVAKWYNKRIIYEEKAYEICNKFVT
Ga0208559_1017945F080247N/AMIVWGKLIECMIDADVNYLNGELFGNPLRIKGKFLVFGNLNIFEKTEMVSLSEEKTLQVCSPIDATFMAYYQGMVAIMSFYFKEREMYANISLTDPETIKGFVNMSSFYKKYGISIPNLLDKIMYRKVPT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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