NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208447_100895

Scaffold Ga0208447_100895


Overview

Basic Information
Taxon OID3300026768 Open in IMG/M
Scaffold IDGa0208447_100895 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3800
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038746Metagenome165Y
F067919Metagenome125N
F070689Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208447_10089510F070689GGTGGMTLEVSYNVYRRLVQFAKTSDKPIPILRYKLSDDISKGDIIKIRSIQNTSRTKTLVAEVVDIKKYNVNKDSIPYDELKPIYEDYINVIPKLGQIVIVYVKPINF
Ga0208447_1008954F067919GAGGMTRSLSKGKELILINKGDEIEFLIDDADDGRVWSIKPEYHTKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELIKLMKTRPSETIENLIGEKVKISKVTVKDLVSLNTEE
Ga0208447_1008956F038746AGGMIRKGNKYIMVIRTPKDLEEIRNNIDKYKSELKDGELIEVQIAKSGKYTLKMTLSKEGVKYEISGDDKKHVLIIENKEDAVALQKLIQILLAIAFNKPN
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