NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_100912

Scaffold Ga0208313_100912


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_100912 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6698
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfolobus → Sulfolobus islandicus → Sulfolobus islandicus Y.N.15.51(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1009123F011097GGAGGMIRDVPILNSGGTDPFTNLTVGGGPITGNSSFGQLLRFHPSYARLLILITGLSGTSPSIQFTVGSYYGSSNYTLPPISSPQYVQIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSTSGTSTAITAYIHFEFEDEEEDEE
Ga0208313_1009124F008949AGGAGGMSSQTVQLGTQTITPKVEDLGNSYYIEFQVNITKYLNNPVNQTVDVKFTCNKYKQVPSTNPLSPPTTVQKTIQECVDEWFDQHKSVYEVA
Ga0208313_1009125F076262AGGTGGMSFNPVIKGSYTLASPQSVSVAASSSSPVSISFTPLGAGELYVYITLPSGVTATISIGGQSVSLSNGSNQFLIPANTTIGNITINNSNTTAVSVVIWALFIEVT
Ga0208313_1009127F021133N/AMAKRDDLIRQIYENGNYAIKKICEMEPDDNMANFSATDCIIGTTNAHLALKIAKEKGYPQDVIEYLENQSKQEQWHCRLHIGKPPKPYDFVVAQKHREILLKHGIYVWMGVMQLLGEKVALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIIELQKEYIAEIFKLK
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Institute for Fundamental Biomedical Research
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