NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_101904

Scaffold Ga0208313_101904


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_101904 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3879
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1019041F021133N/AMGRRDELIRQIYENGNHAIKKICEMNPDDKMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSRQEQWHCKLHIGKPPKLYDFVVAQKHREILLKHGIYVWMGVMQLLGEKIALAKAICWRRDDDPHFVNKFATADEYYHTTYPLLLLSKYASK
Ga0208313_1019042F023140AGTAGLKLHERILISNVFIGLATVPIYIVLKSFPFFIVFGAGILTTLSVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLAHLVKHLPINPLLDYIILFVVGYAISTPLIFLTYYITMILYGKK
Ga0208313_1019043F076262AGGTGGMSLNPVIKGSYTLAAPQTVSVAASSSSSVSISFTPLGAGELYVYITLPSGVTATISIGGQSVSLSNGGNQFVIPANTTIGNITINNSNTTAVSVVVWALFIEVT
Ga0208313_1019044F008949AGGAGGMSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDVKFVCNKYKQVVVPSNPLSPPTVQTVQKTIQECVDEWFDQHKSVYEVA
Ga0208313_1019045F011097GGAGGMIRDVPLYTSGGTDPFTSLTTGGSPITGNGSNYQLLRFHPKYARLHIYITGLSGTSPSIQFTVGSYYGSNNYTLPPITSPQYVYFIGNENKTIITYLNTSGQVLQQVELPYNIFLNGVQVNWSVSGTSPSITTYIHFEFEDEEEDEE
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