NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_101943

Scaffold Ga0208313_101943


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_101943 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3817
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfolobus → Sulfolobus islandicus → Sulfolobus islandicus Y.N.15.51(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F023140Metagenome / Metatranscriptome211Y
F045200Metagenome / Metatranscriptome153Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1019433F023140N/ALHERILISNVFIGLATVPIYMFLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGVWAILQKFAVTLPTSFALSHLVKLLPINPLLDYIILFVVGYVISTPLIFLTYNVTRWLYNKKR
Ga0208313_1019434F076262AGGTGGMSFNPVIKGSYTLTAPQLVSVAASSSSPVTISFTPLGAGELYVYITLPSGVSASISIGGQSVSLSNGGNQFLIPANTPIGNITINNSNATTAVSVVVWVLFIEVA
Ga0208313_1019435F008949AGGAGGMSSQTVQLGTQTITPNVQDLGNSYYIEFQVNITKYLNNPMNQTLDVKFVCNKYKQVPSTNPLSPPTTVQKTIQECVDEWYNIHKSVYEVA
Ga0208313_1019436F011097GGAGGMIRDVVLYTSGGTDPFTNLPTSGGPILGNGSNGQLLRFHPNYARLLIFITSLSGTSPSIQFTVGSYYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSGQVLQQVELPYNIFFNGVNVSWSLSGTSPAVSVYIHFEFEDEEEDEE
Ga0208313_1019437F045200N/AMYFSIIVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDDTVEQTIGGGGAPWPDAAQIQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPSYMNGVNGINYNYPHGDSLIAIAFADIHKNPAQPQTYYQPIFNGYGSSWPAFTGLPENLQTCPSSYGGNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYIIPITLPPRPDWGGISSMRMKMLYVAPIFHQFQGYGGLAFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYLDKSVISPKGKTLVTVPPLIFGQTSPGGGYYVIGNYHGVVTYTFGKKYARVYFNFNPYNAGVVNIYTRYRSRSAPDLQQMYGNPPNSGSIMYSPVVERNFGTLVYFSDYNYNMPNSTYYPRTSKFRVDGQVLWIVSVGGTGGMWGVGPVFIELEGD
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