NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_102401

Scaffold Ga0208313_102401


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_102401 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3257
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021807Metagenome / Metatranscriptome217N
F103564Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1024013F103564AGGMSDRKMITKKQLKEVIMLIAPLIPIIGIPVSTIYRPYGNVFTAFLIAWLVILGFNLMALDYIYQFKDDLRSPNAKRRLRAIRGIKLEAAIAYAFTASGIFSGGLLLASYLIYLRAVALGLTKIPAPMTSQEAILLLLLLVTLPIPAYIVRRETKKAIRLGMGNAEFNSR
Ga0208313_1024014F021807AGGVRTKHKVALGLGAVALLVFIGLTVHSVSAFARHVLSIIGGVFGYVLYDASFIVSADIVYKGITRHFKTAKSKIAFGLGAIALLVLSGLAVHSISVHVTEAAQSDYDVFTVSFALLISVILLEMVITEIKDMEYRAVMVMESLGIALLLLNAGLLGFIAWALGKGLEVGLDFKALLASSAISAFDTYGLEAFYFGGFIYPAENTSIRHGHRQVRSEGD
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