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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026882 Open in IMG/M |
| Scaffold ID | Ga0208313_102901 Open in IMG/M |
| Source Dataset Name | Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2853 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, USA | |||||||
| Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008949 | Metagenome / Metatranscriptome | 325 | Y |
| F011097 | Metagenome / Metatranscriptome | 295 | Y |
| F023140 | Metagenome / Metatranscriptome | 211 | Y |
| F045200 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208313_1029011 | F045200 | N/A | LHMVYDMLDDTVLMYFSIVVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNNQPYFLGGLKFDDTVEQTIGNAGVLAWSGTLQMQSAPQFAISFDWYKLGGIMGYKPSNGFLPAIYVGNPLYMGFYNYPHGDSLMAIAFADIHKNPAQPQTYYQPINTGYGQAFPAFAGLPENLGSCPSSYGGNTYYCIPILGFAGMLDTHDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDFGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHSDSYIDGVAIYLDKSVISPKGKTLVTVPSFIFGQTSAGGSYYVIAAPDGSAVFVGVVTQTFGKKYARIYVSQNASNFDFINIYTRPRTRSAPDLQQMYGNSPNPNNTSTYYPSVERNFGTLVYVTDYSYNMPYNLNYSRTSKFRVDGQVLWILSGPITWVELEGD |
| Ga0208313_1029012 | F011097 | GGAGG | MIRDVPLYTSGGTDPFTYQQTGGSPITGNGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFAVGPAQSLLIRVPPTPSPNYTLPPITSPQYVYVIGNVNKTVVTYLNTNWQILQQVELPYNIFFNGAYVSWSVSGTSPSISAYIHFEFEDEEEGE |
| Ga0208313_1029013 | F008949 | AGGAGG | MSSQTITLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPTNQTIDVKFTCNKYKQVAAPRTDPLSPPTVQTVQKTIQECVDEWYAQHKSVYEVA |
| Ga0208313_1029015 | F023140 | N/A | VFIGLVTVPVYIVLKPLPFFAVFGAGVLTTLTVLILFFYFLSAKFVGIWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |