NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207856_1002023

Scaffold Ga0207856_1002023


Overview

Basic Information
Taxon OID3300026983 Open in IMG/M
Scaffold IDGa0207856_1002023 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4362
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020721Metagenome / Metatranscriptome222Y
F105624Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207856_10020232F020721AGGAMSLDALNTLDALDSDQLSRAWGGVTMKLTQYGYPNDPYTDSETRKGHGAYHSLVRDESVAMTDSGLRALGLSRSDVRHSPFWVDIRLKGGGVMQRRIDDRAPERDMRADLYQPRGFDRSLPDYADVQLHHR
Ga0207856_10020236F105624GGCGGMSPRADHLSDDQMAAQFERIIRRVKQSMNYRGSYSTRDILGSLVARWLHSGEWQRLKALPPEERHIGESVRRFILDRIDHLRRRGVSAELAEEEVVLPDEATLVELVELAELRAWIEVRVTELERGETDPRIRVPVARPCDVGRALRLHLAGRTQREIAAELGVSLGAAHKRILEGTSYLAVLQGIEAGLG
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