NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207784_1015257

Scaffold Ga0207784_1015257


Overview

Basic Information
Taxon OID3300026997 Open in IMG/M
Scaffold IDGa0207784_1015257 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004436Metagenome / Metatranscriptome438Y
F064234Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207784_10152571F004436N/AMRVRSGVGVVELLVWHGQDPQDGHWGCPIREQWGLSSHQQLSLALEDRLAFTVTATGSYAEAAAVAGKWGCEVEDSTLRALAQRLGQRAEVQTQDRLKSAPQETHPQRAASPLAVLMLDGWQVRQRGPGWGKNKTQEKRVDWHELRTGVFYRQEQASHSEKGRGVLADKVVVSWQGEPLEIG
Ga0207784_10152572F064234AGGAMNSEQPGRARSLREIELEVEAEGREWTRQRLQQRLQEEAERHGEVFPPQRPKAGASAQSCDAGAQRRGRR
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