NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1003108

Scaffold Ga0209093_1003108


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1003108 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8847
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F026183Metagenome198Y
F029971Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209093_10031084F013163GGAGLSTYVAGKYRAAKNVMALANRGSPRGSSRKWQTSTGPRGLSINHLSSPRQEADTDTHDMVAVLPSGTPGIRTVGAAPFPRREAPTGPPLCYMCWKRGHRVPDCKILTDKQRDIVKAARSTFLRQRNGGAGAALDRTAVVALLWDDYLGGLESTKKEGGDVPPLVTPSKGCRGAGSA
Ga0209093_10031088F026183GGGGGVFVDGHVRTKYKLETRGAGPYKVLTRGEGTFSLDIGGYPDTVSSDHVTAAPGPRGDPQTLLQNLGVPQDVLLPEGHQHTGKELVWEAFVGQEVADDGTLRLWTRWWGYHPEEDTLELASRFNLRKVHQHMRRVGLRVEETGSVVGFLA
Ga0209093_10031089F029971N/AVTGAAGSSPAGPSSSSPPAAPSVGNFLGNRIVSFDPVEHRDIPDAAFDQLDHVPSDRVLQGLARFVACDLEELRGYTTGTLMAGLCHTVVSLGDSIAQWALDNAGVPPHQVEGLLQPVGRRNARAVLLRETSVAAGGVGRRQQHQRDGDVYHEEPPAQRPRGPPGPEGGAPVSGRR
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