Basic Information | |
---|---|
Taxon OID | 3300027028 Open in IMG/M |
Scaffold ID | Ga0209295_1001547 Open in IMG/M |
Source Dataset Name | Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8404 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Heteroconchia → Euheterodonta → Imparidentia → Neoheterodontei → Venerida → Veneroidea → Veneridae → Mercenaria → Mercenaria mercenaria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Portugal: Porto | |||||||
Coordinates | Lat. (o) | 41.162 | Long. (o) | -8.622 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F052353 | Metagenome | 142 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209295_10015475 | F052353 | N/A | MSRVPLGGLPGATSPTGERRKVTRILSPAHRHYEIAATIGPCQREMHSCRPVLDIGAGFKFVLTNVLPANWQSCAGKLERAPRIKDANNNRLIAKDAIHLYIDVGCAKVFDRFFVAEHLSVPCILGTEFMDNHVEATFTRLKKVVWQDHVGEVTRNLRRTPILATLLANKWERSWEDQPAKVRARRQVRAKERKEEWVMSTCATPGLVTISPNIRLCRHK |
⦗Top⦘ |