Basic Information | |
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Taxon OID | 3300027028 Open in IMG/M |
Scaffold ID | Ga0209295_1002513 Open in IMG/M |
Source Dataset Name | Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6455 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Rhodophyta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
Source Dataset Sampling Location | ||||||||
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Location Name | Portugal: Porto | |||||||
Coordinates | Lat. (o) | 41.162 | Long. (o) | -8.622 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052353 | Metagenome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209295_10025137 | F052353 | N/A | MSRVPLGGLPGATTPTGERRKVTRILSQAHRHYDIAGTIGPCQRKMYSCRPVLDTGAGINLVRHNVLPANWQSYAGKLERTPRIKYANNNRLIANYTIHLYIDVGCAKVFDRFFVAEHLSVPCILGIEFMDNHVEAIFTHLKKVVWQGHVGDVTRNLR |
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