Basic Information | |
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Taxon OID | 3300027028 Open in IMG/M |
Scaffold ID | Ga0209295_1008064 Open in IMG/M |
Source Dataset Name | Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3451 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
Source Dataset Sampling Location | ||||||||
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Location Name | Portugal: Porto | |||||||
Coordinates | Lat. (o) | 41.162 | Long. (o) | -8.622 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005043 | Metagenome | 413 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209295_10080644 | F005043 | GGAG | MCPYGLQIDITSSVFLHFWQGNSRKSQDLAWAACSVPRKADQALTNSAFCWMQGPGTECGLSIGFDALLLSF |
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