Scaffold Ga0209730_1048534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209730_1048534

Scaffold Ga0209730_1048534

Overview

Basic Information
Taxon OID	3300027034 Open in IMG/M
Scaffold ID	Ga0209730_1048534 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Davy Crockett National Forest, Groveton, Texas, USA
Coordinates	Lat. (^o)	31.11	Long. (^o)	-95.15	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010557	Metagenome / Metatranscriptome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209730_10485341	F010557	AGGAG	MNEDVTNMNTAQEYDLKSGGQSADGEKFYLLGFEAALHARNRCKEFDQIASEMASDLEDLQRQYPGAAVEEPFARGYQRGREYYQRLCDESNAAL

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