NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209879_1004957

Scaffold Ga0209879_1004957


Overview

Basic Information
Taxon OID3300027056 Open in IMG/M
Scaffold IDGa0209879_1004957 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009924Metagenome / Metatranscriptome311Y
F018834Metagenome233Y
F022290Metagenome215N

Sequences

Protein IDFamilyRBSSequence
Ga0209879_10049571F018834N/AMKHVSYKDYVITVTANNENGTWRSHVIISWYAGKFGSHDEVCFTTEMEAQEHAIQLGKHWVNNRLQSMQG
Ga0209879_10049572F009924GAGGMLLRDHPLHALAILEAATLECKQRDIYTPEVREALDFLHSHIGREWLIPQFRYHAQLNEVDLDIEAQQQALRAIFPGIRESVKDLLGKQMDALARQFTGTHDMKVKVEIDRLSSELVKLDRPWVFVAR
Ga0209879_10049575F022290N/ALPQQMNTVDFERLKEKENAAIKIIDSWPRIFQLLVYRQLYAFGIRISNIDFEIEKELKKS
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