NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208959_1006854

Scaffold Ga0208959_1006854


Overview

Basic Information
Taxon OID3300027062 Open in IMG/M
Scaffold IDGa0208959_1006854 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073670Metagenome120N
F087323Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208959_10068542F087323AGAAGMQSVGGNLLQDLGNYANHNGKRERGLSTTFLRARSEDGTQSLFSISSKRLSIHADVQKEKVGWLCLSLQHGQW
Ga0208959_10068545F073670N/ALKQTTDKKYKIGENQPKTDNFIQFAHEGVMYFIWIDPSDPTENVAWWSDTTFEEWVTDTVALRLAAQQNPSETFFYCVGFDYYHDQTKDGIFLGSSITEFHDEKQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK
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