Basic Information | |
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Taxon OID | 3300027109 Open in IMG/M |
Scaffold ID | Ga0208603_1017396 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1163 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.532967 | Long. (o) | -72.209488 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029255 | Metagenome / Metatranscriptome | 189 | Y |
F035901 | Metagenome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208603_10173961 | F035901 | N/A | PSTPGTPFGPNDYAFMIARPYPKETQLAQKRFQNFLRRANTKGRLTLAKTPFVAVRAYQLNADEVPGLNWRIALGRVPMKGYYGDDLMHNTGSLPVEFLLIFDQRTGRLASSDGILVIGSPVRGSIGQFGGVQAIYADGGWW |
Ga0208603_10173962 | F029255 | GAG | MSISEISRDCSLIWGICRPSFGIYLKGLNLMNHKSSIFFAVAALLSACGTMNSAKVDNRDFAIDTYYPASNEIRLAEQRARQYWEKNSARVGAEPRYLAVEASALLAPELSAEFSTKLDRSETSGAYFTQGISSSSKQGISGVLIFDTQTDRSVGPQGYIIVDIPSRGRVVRVADYMARYIGAGG |
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