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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027114 Open in IMG/M |
| Scaffold ID | Ga0208009_1000832 Open in IMG/M |
| Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8783 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio | |||||||
| Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F002071 | Metagenome / Metatranscriptome | 596 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F005177 | Metagenome / Metatranscriptome | 409 | Y |
| F005531 | Metagenome / Metatranscriptome | 397 | Y |
| F006984 | Metagenome / Metatranscriptome | 360 | Y |
| F009143 | Metagenome / Metatranscriptome | 322 | Y |
| F049621 | Metagenome / Metatranscriptome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208009_10008321 | F006984 | AGGA | MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETFGMGDISTMGFPTKIEQVSYSNPVFAFFNIHSYKDDGITDEEYACQPSRGDIDIQNDPDWFRKSVEFAKT |
| Ga0208009_100083211 | F002071 | AGGA | MTNATLEVGQTYTTTTSGITGVIKAVDNHPSGVNRILLDVEGKERWTSATAN |
| Ga0208009_100083213 | F002245 | AGG | MSNLIKVPHTITFEAIINLDTIPANLLPRLIALDEKTMTEMCKEATLHALAQSNVLKTANEFNTWAEMTIKEGN |
| Ga0208009_100083214 | F049621 | AGGAG | MAELNYFNALINSVVGDQDQKKAAKEYLAEIDPDIWGQEE |
| Ga0208009_100083218 | F004840 | GGA | MYKLTCAYDSNAPHWSAEYENEFGAWENFFRFTDWGSAHEYSTVNLSTPTGKMYTKVFYRNGMVSVK |
| Ga0208009_10008322 | F000450 | AGGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHQMLANLAEAVIKAQGRWSDPSYATRITISHMIGEGWAMETGWGLHVNEIGDNEHKIAVVDFQQQTFSLHEEAPYSDESNKVRGMKNEAIFTQDLSNFCEKYSDQLVRV |
| Ga0208009_100083225 | F003690 | GGA | MITDGFILEINSDYGLELDSFLGAIYLPWHTIAITTALLIAYKIYKRKKNK |
| Ga0208009_100083226 | F009143 | GAGG | MMSKWDTIQADVADAYVYLEEEEAYNKALAEGLDLRLSEYEEEEMSALTLDWDN |
| Ga0208009_100083227 | F005531 | N/A | TLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVEVK |
| Ga0208009_10008326 | F000980 | N/A | MTKYEKYTWVCTGDCDALIEYTIKDGFGWPAGEMNLTCRCNSNCTLLSVEDATIPYTDTPLPTKEEKMEDATISTTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA |
| Ga0208009_10008329 | F005177 | AGGA | MKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTELVFSNMRRFNGTIRAYVYDNLKKKKTTALLLPMEFIPKKTELTNLVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |