Basic Information | |
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Taxon OID | 3300027114 Open in IMG/M |
Scaffold ID | Ga0208009_1001363 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6884 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000141 | Metagenome / Metatranscriptome | 1941 | Y |
F003825 | Metagenome / Metatranscriptome | 466 | Y |
F028115 | Metagenome | 192 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208009_10013631 | F028115 | N/A | YEKKLQERRYGSPGSRSAAVEDALRASFAVENKQDDPQTWSVAEVVDQIGASTPNEPPSCEHGHILKQGISKTGKPYYGYVCKGKVTEHAKWAKMTANGHWFFEGVE |
Ga0208009_10013632 | F003825 | AGGGGG | VGYIAFINGKGIQVVMDDNGVHLEQTIIKCEVCDDDRVFKDGTCFKCHELINYDKPN |
Ga0208009_10013633 | F000141 | N/A | MTSPTSFKCNGCKRATEFLWLDAIDMPDGFKTYQCMDCGCVGVKNVVEALSVPDSDISRCDKCGSWQFKEMPCHTCNLIGAK |
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