Basic Information | |
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Taxon OID | 3300027114 Open in IMG/M |
Scaffold ID | Ga0208009_1005592 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3303 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F057144 | Metagenome / Metatranscriptome | 136 | N |
F067678 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208009_10055922 | F067678 | AGAAGG | MATNYYDDDEDNDTTTDVVGQLRKVNRTLEKRAKELEQELAGLKSQTRQRTVKDVLQAKGLNPKIAALIPQDIEPSDEALMKWIEDYGDVFGIQTPTEEKPAEKSPEIKAQARINNIVATGTAPDIDEDAFAKIASAKTKEDLDILLGLN |
Ga0208009_10055926 | F057144 | AGAAGG | MTAIVGVQGKGWAVLAADSMTTYTDKPYVAKGCEKIVKVNEYLVAVAGDAIAGDILNNLWQPPKVIKTQDSDRFMMIRVLPSIRQTLTEAGYDPAPKNKNDDDAGWDALICFNGKIYQVSDDYGYMRDDKGLYGIGAGGGIALGALSALDAERRTHTKAASAAKKAINIAIQYNIWCGGPVNIKTQFTR |
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