NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208009_1005592

Scaffold Ga0208009_1005592


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1005592 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3303
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057144Metagenome / Metatranscriptome136N
F067678Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10055922F067678AGAAGGMATNYYDDDEDNDTTTDVVGQLRKVNRTLEKRAKELEQELAGLKSQTRQRTVKDVLQAKGLNPKIAALIPQDIEPSDEALMKWIEDYGDVFGIQTPTEEKPAEKSPEIKAQARINNIVATGTAPDIDEDAFAKIASAKTKEDLDILLGLN
Ga0208009_10055926F057144AGAAGGMTAIVGVQGKGWAVLAADSMTTYTDKPYVAKGCEKIVKVNEYLVAVAGDAIAGDILNNLWQPPKVIKTQDSDRFMMIRVLPSIRQTLTEAGYDPAPKNKNDDDAGWDALICFNGKIYQVSDDYGYMRDDKGLYGIGAGGGIALGALSALDAERRTHTKAASAAKKAINIAIQYNIWCGGPVNIKTQFTR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.