NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1008862

Scaffold Ga0208009_1008862


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1008862 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2544
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055683Metagenome / Metatranscriptome138N
F064669Metagenome / Metatranscriptome128N
F071171Metagenome / Metatranscriptome122Y
F099193Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10088622F071171AGGAMRITVLIITGMLLSNCAAIQVVSGGTIQAKDVISSINTVNNLHKYSEPAAREELENKIKQITRSIGAGAETQ
Ga0208009_10088624F055683AGGAGMAQLNTTEQILQYAKEQSGIQQQESVGGSLYCEMIDRDQAEWFRKDLQEKVSQDTVVKMYVLGKGVNRDRQEYVYDFVPKSEEIPAEVEHMVELEAEIARGK
Ga0208009_10088625F064669AGAAGGMANITRALHPVEQWVQHITRTTPDLILGTLQHADLDLAQQLALEMQQRGLSRQDIQRLRNRKQPGSTT
Ga0208009_10088626F099193AGGAGMYIMFDESRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLFDWDPEKKECTLQLRWGDDQNDHEQYTHHEDLDEQEYHRQYDEYVLSVKLTDFVR
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Biomedical Sciences Research Center "Alexander Fleming"
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