NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1015417

Scaffold Ga0208009_1015417


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1015417 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1790
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F009883Metagenome / Metatranscriptome311Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10154172F009883GGAGVNELSIVIFMIIAGAFWAVMSYAVGFKEGQRQGYTRGRAVSRHISQLDQEVNN
Ga0208009_10154173F012452GAGGMAGFLENYEGNKERTDRWIATFANGRLEAHIVEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKATKETMEQVKINDATKPVEHDYWTTKFGDIPSYKTAGEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRVFRTGTSAKTGKEWANWSCVGKKPDQCEPLWLVFTSRGKWEPQV
Ga0208009_10154174F000403GGAGMSDFVEILYPQSMTAKLMCNGEIVEEYKIEQCDKCSQLKKFDKFGYQKGYDRTDNIIWFCGDCR
Ga0208009_10154175F000903N/AMITRMEEIQCLIAAIDHCKDRDADHSSRIIRNLSWFEYVAQNAESMVSEWIVAKTLGYDYKPGMTWDKEKADVGEHIEVKWSPNPHSNLWIQEQDRHDRDIAVLVTGNSPKMHIVGWIPVAVCKKPRYRNASQNNWAVPQINLQPIETLMRSNYAHPSI
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