NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1015872

Scaffold Ga0208009_1015872


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1015872 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F033405Metagenome177Y
F048799Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10158722F048799GAGMTDVGVQLNVVTSLKNTQNKRRKIVADAKLNNFSPSARQAILEFEDWQRRVFAKNAKKGWRFFQPDTVDKPTPRSAKEAWGAPYESEDRIEKDEKLTNRIMLGLFLAFVVVLSIL
Ga0208009_10158724F033405GGAGMINKKTDEQLIEAVNQYMEKYPNASRNHIILHATGSAARVRELAKQGLIKLPKALPKGANTNWNGYFSKTSERNSSRKGMKYSV
Ga0208009_10158727F006587GGAGGMDKEYKGTGFILVGLIVGCCITWSIMKYNQTQTKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRSF
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