NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1018170

Scaffold Ga0208009_1018170


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1018170 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1612
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003750Metagenome / Metatranscriptome470Y
F004476Metagenome / Metatranscriptome436Y
F004583Metagenome / Metatranscriptome432Y
F048994Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10181701F004476AGAAGMLFSKQGFKTVDTTEEFVKQVMEFGQKDIVLSITHSNGVIDIVVSPTMDAIEADVYHFLNDETELKYTMPIKSLTASYISSLSLTSAIHTYLSEAFKVADIFARTTRQSTDYAK
Ga0208009_10181702F003750GAGGMTLDMVNRLFYVVFWGSGIVAFWQITKHMPKALYTLLECISVMTVCVICIMPISALVEFVLGGNIHTTMMFVAGLCGIGLLSGIWMVMVQSSRALQGKKQYQDVIL
Ga0208009_10181704F004583AGGAGMKSTRNSDRLREILVNTRHQIVSLKDIQIDLLRHDTKVANQVSQQISALEEVYKHQLSLVQLAEGLEPKRSGWFSGHVKTKEDRLANILD
Ga0208009_10181705F048994N/AMIGIVKIEFGMMNLYVNGVCVVSTTVIAGIKHGVRKYNLQGYTMVA
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Institute for Fundamental Biomedical Research
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