NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1045643

Scaffold Ga0208009_1045643


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1045643 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010398Metagenome304Y
F018927Metagenome232Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10456431F010398AGGAGMEISIEGVVEVNYHLVIDEDVFNVCCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNEADIDYTEIHEQSTVFADTLTIDDSDNMTTVYYDKNRKTDSFEIM
Ga0208009_10456432F043399N/AMFYDDFPIVIWTIVKKNSNYILLDSCGIEVFRRKENRKQEIYQYCEKNGIDYQEEF
Ga0208009_10456433F018927AGGMNKHIEITRHLTVDGTTTFYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTLYKAEFDRNGVKHIIPVGNELLE
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