NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1000575

Scaffold Ga0255074_1000575


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1000575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5464
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F019614Metagenome / Metatranscriptome228N
F029411Metagenome / Metatranscriptome188Y
F082581Metagenome113N
F085603Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0255074_100057510F082581N/AMNNVTNDSNMNSTSTKTAKVGRPSTNLKLILNKSFTLKDLQNLNPDVKFVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTINVNEPVTVDQPVTA
Ga0255074_100057511F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKESAEAKEEAAKTGVRNRGRRGTNKQIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0255074_100057512F015582N/ALQSEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEEIHAEIRAKYPGFMPEYDALSDPEYNQAVGKYQETTYSFSSRDLHSSSNSXKKPLTLA
Ga0255074_10005752F029411N/AMNADFNTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ
Ga0255074_10005757F085603N/AMKVQIEFNTDNAAFEDSFLMEVTRTLQQCKSALLDSEKGTITIRHILKDINGNRIGVINIGKN
Ga0255074_10005758F019614N/AMNVASISSNKIQVEYSAMPGDNREFLTFSVPNGWDDVKKLTNKVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0255074_10005759F006181N/AMKRNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASVGWYEVSPDYVNALEKEVADHPSRLDGAWFALSEVMWGRKCVVETV
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