NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255067_1001197

Scaffold Ga0255067_1001197


Overview

Basic Information
Taxon OID3300027129 Open in IMG/M
Scaffold IDGa0255067_1001197 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4644
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F043404Metagenome156Y
F082675Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0255067_10011971F007525AGGAMKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMSLSLPNLVNGELSDEGVTIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEVYDTFYEAIDGGIDHILDDRNW
Ga0255067_100119710F008496N/AMPETNATFVKELVEAGELKPLYDPKATIVVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKVKDYLVENYDEIGEEHATEIANILGIDLSKEVEVEFNVTIKATISMPVNEDVSDLSVYDFDVTIESNESKYEVQEFDADIDSIDERY
Ga0255067_10011972F082675AGGAGMSKQYHWVVVYNEHWGAFMVDAESEFDRDKIMYDKETGRWEWLDPESEEEAEYYRLEEILAYNLTRLDLTAERV
Ga0255067_10011977F043404N/AVVGYRVSTYKRTNMIDTDNPLLQTLADDFVDLHGCGGIELEQWETAYNFVKHFYHTEEMVQIIIRSKK
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Institute for Fundamental Biomedical Research
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