NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255082_1018632

Scaffold Ga0255082_1018632


Overview

Basic Information
Taxon OID3300027139 Open in IMG/M
Scaffold IDGa0255082_1018632 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F010397Metagenome / Metatranscriptome304Y
F031030Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0255082_10186322F010397AGGAGMNASEFERNKPTITMKKINDLINRIEEERVKTEILYKDRVRSLDEINSLLLDMKDSFKKG
Ga0255082_10186323F001840N/AMKDQDSIFLICDCYEHGLLVEKFKDENEVSLSLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFIILNEENQKQLKEFLNNECK
Ga0255082_10186324F031030N/ADIVCKYPLPLPEDPKGYINDRYQTKDFDNAMDLYEIREDGTLWLRCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQILPITDTVRLYAYDSDTNETYDYWIEYDVTFVDGKVTGAKLLEFTATDNSERKEQHRKDVEYWTNRQKFEYTLFYRLIGKPYNKVITFICRTIHKSATWVTYKIWHVERFLKI
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