NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255102_1004881

Scaffold Ga0255102_1004881


Overview

Basic Information
Taxon OID3300027144 Open in IMG/M
Scaffold IDGa0255102_1004881 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2930
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009334Metagenome / Metatranscriptome319Y
F010227Metagenome / Metatranscriptome306Y
F071946Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0255102_10048811F009334GAGGMKTTMVHDVEVKVGDNVAFKSDIEQWGKIVEIKKTYAGVSLVLENKHGFSGDYIGGETITTQLARDCWAD
Ga0255102_10048812F071946AGGAGMYNVVENPIPKTGLFATPESLDQLMEYCQRFTGQERIIAITVATMALNLSHKLVEDGILSKEVFAQ
Ga0255102_10048815F010227AGGAGMQATQFNVSDKLTLANTDTSEDSISTTYDCNVLVQLAGDSIWDCELEAVTVTSIHIHENFWEDTSTIHITVCYNVNGDTEYEDSWRLYTDSGFSDAISALLGTDVMFTEQGMQDDGYASMEL
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