NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255108_1077779

Scaffold Ga0255108_1077779


Overview

Basic Information
Taxon OID3300027149 Open in IMG/M
Scaffold IDGa0255108_1077779 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)594
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002608Metagenome / Metatranscriptome543Y

Sequences

Protein IDFamilyRBSSequence
Ga0255108_10777791F002608GGAGLVFDLSIAHDRFGSSSHVQQNGCLSHPQDLDAPLHIAAQRKIAAYQQQYADNQNISFLPAIVSTSTRMHGEFLRLLFLQAHRETEAHFIATGMSSQNINPEALRFKRAAFYNGLKSKVGLAAAKAAALRINLNVQGCSIVAPPMHAPSRTPLLLPLLLSHNLPTPRVR
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