NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255083_1041004

Scaffold Ga0255083_1041004


Overview

Basic Information
Taxon OID3300027153 Open in IMG/M
Scaffold IDGa0255083_1041004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)942
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041812Metagenome159Y
F072354Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0255083_10410041F041812N/AMLYQYKPTGGLVEMISKHGDGVIMCIDSQDEVLYVEEQDLIPHLEATTEKLRTEERLTAQLEAEGVKPATPLPKETFPVDTRINLN
Ga0255083_10410042F072354N/APDRRPDDRVRDNRTTLTVQASADRPAYIYGASISLAQDIPAGGLAGFPASPVTADLLGTNTEILLLGPDNSGSPFGVPSSQANGLAAASSSLTIGASGIAQGTGDTTTGDLPFWTTVTTGGITAANAANSMFYKVTSDQLFKVYNMNAITDTSVNGDGVFISADDSAAGKAAYLLCRVNYLRPEAAVAWNDIQGFIDFASQVGGSDS
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