NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209878_1019549

Scaffold Ga0209878_1019549


Overview

Basic Information
Taxon OID3300027163 Open in IMG/M
Scaffold IDGa0209878_1019549 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040395Metagenome / Metatranscriptome162Y
F050357Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209878_10195491F050357AGGAGVEGIRLWRANRQKLVGMVYLDRGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTGQT
Ga0209878_10195492F040395N/AKDAASAASSTIERGSVPRVLGIIGAGAGIPSEMSTATSWSMAESFVLLFGYVSAVVVAAWFVAWVDRKLSSRRLFREIYRELGIGRHPPR

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