Scaffold Ga0208963_1027187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208963_1027187

Scaffold Ga0208963_1027187

Overview

Basic Information
Taxon OID	3300027170 Open in IMG/M
Scaffold ID	Ga0208963_1027187 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	949
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007344	Metagenome	353	Y
F045087	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208963_10271871	F045087	AGGA	MNKEQLKTKVDALQANLDVRKSELSNAQVELNVALNELADAGKPVISCDLAGDLMDQIEEMFSETLLNLCASDLDVEFGIGYDNRIELENVDMSNVGFCRHDL
Ga0208963_10271873	F007344	N/A	MTSYEQRAYDALAMKLTEAGYAYENTSWGNDATASISVTCTRVVDQEIQQFEFQVYIPNCNYFDPDNEYFNTYAVTEEGGNITLDFNQADSVVEHIQDCTRDVHFTN

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