NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207948_1003619

Scaffold Ga0207948_1003619


Overview

Basic Information
Taxon OID3300027174 Open in IMG/M
Scaffold IDGa0207948_1003619 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1744
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007450Metagenome / Metatranscriptome351Y
F056094Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0207948_10036192F056094N/AMKRKSLIEAVSPEARDFIEAGTPKPQFVQTQPEKAEGKASPALVPEPSKTAIDPAEKKGIPASAPVLQQPADEIPSPVLVPQTFRLPQRLIEDLARAGELRALSWLDREGNTWLPIGSKSTVP
Ga0207948_10036194F007450N/AMSSTNLNNEDYFSDHPKRLPSFDALFRAQAQLSPENFFRILERQSGDHHCSQDDYHRAVFLFQRLQSARRTISNLSLFLIAMSLVPFVCVALPEQWRLSVLTSGIVMEIFAGAILYFAHSRWQARRRDYCLWLRLIYRRVIDL
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