Scaffold Ga0208555_1001025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208555_1001025

Scaffold Ga0208555_1001025

Overview

Basic Information
Taxon OID	3300027213 Open in IMG/M
Scaffold ID	Ga0208555_1001025 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4736
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F066745	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208555_100102510	F020891	N/A	HGGLLVSDSPKPKKAAPKVVEEDWLGQLEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFVNWLNKAMTERPIQYSGAGKTSFAPVQPQGPAEPAGWQAWVRENSADPSNADKPWSALDASAQRYIISKLNGPSTVHPPRPSPRPVLDREEVSDEDIPVARQAHAGAVLVGSLLQGYR
Ga0208555_10010252	F066745	GAG	MPFRSRAQSRACFASKGFDGGVDCMKWAKSTQYKKLPARVKQPKKK

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