NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208442_1013671

Scaffold Ga0208442_1013671


Overview

Basic Information
Taxon OID3300027229 Open in IMG/M
Scaffold IDGa0208442_1013671 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1562
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2322Long. (o)-123.8817Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F011299Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0208442_10136711F011299AGGMMTRKDYVATAEILKFASDKTHPAVFSKIVNDFAEMFAKDNERFDVIRFHEASG
Ga0208442_10136718F000447N/AIFRMDEEGAGWVDLSEATPDELFNIELGLLEEGAFE

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