NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208442_1023904

Scaffold Ga0208442_1023904


Overview

Basic Information
Taxon OID3300027229 Open in IMG/M
Scaffold IDGa0208442_1023904 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2322Long. (o)-123.8817Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009402Metagenome318Y
F038093Metagenome / Metatranscriptome166N
F068462Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0208442_10239041F038093N/AGMCETFYSKNHILLLTHILMDKIKINSFILRYGAILHTIFLFPILYMADIYANTPMFWAFLLNHVMFGYFILVQGCALGIKQTINIIAHQDAAKAREEDTNKNN
Ga0208442_10239042F009402N/AMKKLDEQFESAGFKYKQTHREDMFAIYERKYINSTKDPHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKDAYTRLDKMMKEDVINKEAANKKAERKNAK
Ga0208442_10239043F068462N/AGYQDYVYQTYWNCAAATSGPTGQAYDASFAGATPLGTGAATVSGYAFTPFADLTQDDVLNWIWLTLPSGHGKEYYEQKVSGELVYKINYQTEEPALPWNPPVPPPSGSL

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