NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1002499

Scaffold Ga0209303_1002499


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1002499 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9461
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F027093Metagenome195Y
F031346Metagenome182Y
F100271Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10024991F027093N/AVDPTRDVDEVPVRIQSRPKGIRPRYAPLPKGVGGLNVVAVLTGSTCQVACRVWLDAGRELALRFIVETGSCVSLVREALLPPEMKVALLDAATAQLFDVTWGLLPITETVNLTMRVGICSAPVTSGVVRGMSVPLLLGTDYTDVHVPNICGPEGIIQIRKRCMVPILRRGKTVSYARAGQRSKSGAAGEADIKVRLAH
Ga0209303_100249910F023776N/AVIRSDEEPLPIEEVPQFEDSPNDAEAYALRRGGVFLCSSESSAPISDRMKQFARFLMEEGTRKLAGSCVIVNDELPISLLQDKYR
Ga0209303_100249913F031346N/AMDSTWIPTIQHVHVTGDGFIHADASWIDSTTAAASKEVIPVAWLEFSLPSMTRLFALDPQLALRHFPRLNRVYGPYTYSWPKSAPATLIGSDPSVPVLPNGLLPPPVQHLDSVLRRLVTTTEAGTVAIPQWTNNSWYATAIRACFEYEALLSTDARDTNPTPWAMWACHFLHRYDDK
Ga0209303_10024997F100271N/AMAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATLGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASRRGPLEDLDFSKAPEYLHKQIRDMLKTHSSM
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