NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208446_1049733

Scaffold Ga0208446_1049733


Overview

Basic Information
Taxon OID3300027263 Open in IMG/M
Scaffold IDGa0208446_1049733 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2861Long. (o)-123.7318Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055669Metagenome / Metatranscriptome138N
F078622Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0208446_10497331F055669N/AMSVTLIAYPLNDSDVEVPYVVDTMGGTDIAITFTIDDIIDITKRRGSFSKTIELPNTTTNASLFKFAYN
Ga0208446_10497332F078622N/AFGAGPMNLKALTSGQCSDGLAGSVNFPTTEGSGYYIQFIDIADQGYEAVWFRIGPCERFNSIPVHFQNKFGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGDFDYVYALNSDWLTDAESEWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
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