NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255580_1124764

Scaffold Ga0255580_1124764


Overview

Basic Information
Taxon OID3300027264 Open in IMG/M
Scaffold IDGa0255580_1124764 Open in IMG/M
Source Dataset NameAPAL treatment metatranscriptome co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePanama: Bocas del Toro
CoordinatesLat. (o)9.1956Long. (o)-82.1254Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001583Metagenome / Metatranscriptome668Y

Sequences

Protein IDFamilyRBSSequence
Ga0255580_11247641F001583N/AHYIVALGISLSASHLSDLTLTIIANIVXSLFNNSFKTYYLIFTNKHLNADQLLRVMIFHYFTPXYYLYLIQLHILFCHESXDADSGENTIEDKSGSYISXFYDAFLKEIQDAXFXTLIVYVFFWFHIIEPLIINYFYFERXNISEYDEIRFYGVAPHXYFRPLMGLLVVAPTHYEGLFXFAMFFVLLAFLPVIYGFYNPYENESVILPTKITKFQSFFFFLFLXSLFYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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