NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209215_1000063

Scaffold Ga0209215_1000063


Overview

Basic Information
Taxon OID3300027266 Open in IMG/M
Scaffold IDGa0209215_1000063 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75115
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (73.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003994Metagenome458Y
F007997Metagenome341Y
F032436Metagenome180Y
F065097Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209215_100006319F032436GAGMAISNELSSDVAVALLANKKSPQELRRLKDIILEVHSALQKMSEESRAYRFRKKTQEGKKVTKAGF
Ga0209215_100006320F007997GGAGGMRPRTRRNRFSLHTAKIIFASACLCVSALTAFAADNFSRVILRPEVSRSHREELRTRLQAITGLTNLKFDANGSLRLDGEPATRGSESARALLSQALKGPNFIIIEDASSRSDVAFARVVRGRWLRGESTNPPAYVVLIDFTDFHRLSGDAEARAAFDVGWGLLHEVDHVVSDSEDAQDQEAVGECEDHINRMRREVGLPIRVDYFFSRAYLKADANFNARYVRLSFERRDETSLQTKRYWLVWDAATVGGLLGESQRALVR
Ga0209215_100006321F003994AGGAGGMNQARKEREQTFLVQCIWCGSKIRDDKEEESKGVCLKCFYQILSNHLRSQKRTVYGEFVSDR
Ga0209215_100006348F065097AGGAMPNHPNTDNENESASLDAEDWEIALKPYFGYPDAALDLARNLMTIREYLKTTPPDVPQALAALSEAADSLFPLTSFHKGAHDLYRTYIEGHATRAHEALMQSLGVKF
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