Basic Information | |
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Taxon OID | 3300027273 Open in IMG/M |
Scaffold ID | Ga0209886_1001933 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2712 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River, Washington | |||||||
Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F032217 | Metagenome / Metatranscriptome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209886_10019334 | F032217 | AGG | VSCSLRPVGRAQRAPLERLVRATGRFRESEVRTAVELLDEALAGDHDY |
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